Elucidator System Third-Party Software Licenses

Third-party Software Licenses

Listed below are several third-party business licenses that are included in the Rosetta Elucidator system:

ABA (Australian Business Access Public License)
GNU Lesser General Public License
W3C
Apache Software Foundation

Listed below are several third-party software applications that are included in the Rosetta Elucidator system.

• libwww program, governed by W3C

  Copyright © 1994-2000 World Wide Web Consortium, (Massachusetts Institute of Technology, Institut National de Recherche en Informatique et en Automatique, Keio University). All Rights Reserved. This program is distributed under the W3C's Software Intellectual Property License. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See W3C License http://www.w3.org/Consortium/Legal/ for more details.

  Copyright © 1995 CERN. "This product includes computer software created and made available by CERN. This acknowledgment shall be mentioned in full in any product which includes the CERN computer software included herein or parts thereof."

  http://www.w3.org/Library/

• LAPACK 3.0

  Copyright 1999 by the Society for Industrial and Applied Mathematics. Certain derivative work portions have been copyrighted by the Numerical Algorithms Group Ltd.

  http://www.netlib.org/lapack/index.html

  The authors of LAPACK are Anderson, E. and Bai, Z. and Bischof, C. and Blackford, S. and Demmel, J. and Dongarra, J. and Du Croz, J. and Greenbaum, A. and Hammarling, S. and McKenney, A. and Sorensen, D. Copyright 1999 by the Society for Industrial and Applied Mathematics. Certain derivative work portions have been copyrighted by the Numerical Algorithms Group Ltd.

  If you modify the source for these routines we ask that you change the name of the routine and comment the changes made to the original.

• Xerxes parser from the Apache Open Source Effort, governed by: the Apache Open Source Licence, Version 1.1. See Apache Software Foundation for more information.

  http://www.apache.org/licenses/LICENSE-1.1

• Cern.colt

  Copyright (c) 1999 CERN - European Organization for Nuclear Research. Permission to use, copy, modify, distribute and sell this software and its documentation for any purpose is hereby granted without fee, provided that the above copyright notice appear in all copies and that both that copyright notice and this permission notice appear in supporting documentation. CERN makes no representations about the suitability of this software for any purpose. It is provided "as is" without expressed or implied warranty.

• libmspack, governed by the GNU Lesser General Public License

  http://www.fsf.org/copyleft/lgpl.html

  © 2000-2004 Stuart Caie. Email kyzer@4u.net

  The latest packaged release of libmspack is libmspack 2004-03-08.

  The Rosetta Elucidator system dynamically links (run-time links only) to the software, which is governed by GNU Lesser General Public License.

  License

  The library is free software licensed with the LGPL, version 2. This allows the library to be linked into any software, free or proprietary. If you would like to use this library under a different license, please get in touch.

  In addition the provisions of the LGPL, you are permitted to use the library directly as part of your build process provided you meet all of the following conditions:

  Any modifications to the existing libmspack source code are all published and distributed under the LGPL license.

  You must not use function calls, structures or definitions unless they are defined in the public library interface, "mspack.h".

• Portions of this product were created using jacoZoom

  © 2000, infoZoom. All Rights Reserved.

• WinPack for JNIWrapper

  General License Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  1. Redistributions of source code must retain the copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

  THIS SOFTWARE IS PROVIDED BY THE MIIK LTD "AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL MIIK LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

  Copyright (c) 2002-2004 MIIK Ltd. All rights reserved.

• Certain software included with the Rosetta Elucidator software is licensed under the ABA (Australian Business Access Public License).

  Copyright (C) 1991, 1999 Free Software Foundation, Inc.

• HttpClient
  Copyright 1995 E. Nebel, L. Masinter, Xerox Corporation

  Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

  http://www.apache.org/licenses/LICENSE-2.0

  Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

• JAMA/C++ Linear Algebra Package in Template Numerical Toolkit

  This software was developed at the National Institute of Standards and Technology (NIST) by employees of the Federal Government in the course of their official duties. Pursuant to title 17 Section 105 of the United States Code this software is not subject to copyright protection and is in the public domain. NIST assumes no responsibility whatsoever for its use by other parties, and makes no guarantees, expressed or implied, about its quality, reliability, or any other characteristic.

• edtFTPj Source License

  Parts of this software Copyright © 2003 Enterprise Distributed Technologies Ltd All Rights Reserved http://www.enterprisedt.com

• PeptideProphet and ProteinProphet, governed by the GNU Lesser General Public License

  http://www.fsf.org/copyleft/lgpl.html

  © 2003 Andrew Keller. E-mail: Andrew_Keller@rosettabio.com

  The latest packaged release of PeptideProphet and ProteinProphet is TPP v2.8 THAW rev.2 (2006). The Rosetta Elucidator system dynamically links (run-time links only) to the software, which is governed by GNU Lesser General Public License.

  License

  The software is free software licensed with the LGPL, version 2. This allows it to be linked into any software, free or proprietary.

  In addition to the provisions of the LGPL, you are permitted to use the software directly as part of your build process provided you meet all of the following conditions:

  Any modifications to the existing PeptideProphet or ProteinProphet source code are all published and distributed under the LGPL license.